Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (CYC-B) in Tomato Clade
Identifieur interne : 000113 ( Main/Exploration ); précédent : 000112; suivant : 000114Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (CYC-B) in Tomato Clade
Auteurs : Vijee Mohan ; Arun Pandey ; Yellamaraju Sreelakshmi ; Rameshwar SharmaSource :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
The ancestor of tomato underwent whole genome triplication ca. 71 Myr ago followed by widespread gene loss. However, few of the triplicated genes are retained in modern day tomato including lycopene beta cyclase that mediates conversion of lycopene to
Url:
DOI: 10.1371/journal.pone.0153333
PubMed: 27070417
PubMed Central: 4829152
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (<italic>CYC-B</italic>) in Tomato Clade</title><author><name sortKey="Mohan, Vijee" sort="Mohan, Vijee" uniqKey="Mohan V" first="Vijee" last="Mohan">Vijee Mohan</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Pandey, Arun" sort="Pandey, Arun" uniqKey="Pandey A" first="Arun" last="Pandey">Arun Pandey</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Sreelakshmi, Yellamaraju" sort="Sreelakshmi, Yellamaraju" uniqKey="Sreelakshmi Y" first="Yellamaraju" last="Sreelakshmi">Yellamaraju Sreelakshmi</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Sharma, Rameshwar" sort="Sharma, Rameshwar" uniqKey="Sharma R" first="Rameshwar" last="Sharma">Rameshwar Sharma</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27070417</idno><idno type="pmc">4829152</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829152</idno><idno type="RBID">PMC:4829152</idno><idno type="doi">10.1371/journal.pone.0153333</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000388</idno><idno type="wicri:Area/Pmc/Curation">000387</idno><idno type="wicri:Area/Pmc/Checkpoint">000092</idno><idno type="wicri:Area/Ncbi/Merge">001F90</idno><idno type="wicri:Area/Ncbi/Curation">001F90</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F90</idno><idno type="wicri:Area/Main/Merge">000113</idno><idno type="wicri:Area/Main/Curation">000113</idno><idno type="wicri:Area/Main/Exploration">000113</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (<italic>CYC-B</italic>) in Tomato Clade</title><author><name sortKey="Mohan, Vijee" sort="Mohan, Vijee" uniqKey="Mohan V" first="Vijee" last="Mohan">Vijee Mohan</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Pandey, Arun" sort="Pandey, Arun" uniqKey="Pandey A" first="Arun" last="Pandey">Arun Pandey</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Sreelakshmi, Yellamaraju" sort="Sreelakshmi, Yellamaraju" uniqKey="Sreelakshmi Y" first="Yellamaraju" last="Sreelakshmi">Yellamaraju Sreelakshmi</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Sharma, Rameshwar" sort="Sharma, Rameshwar" uniqKey="Sharma R" first="Rameshwar" last="Sharma">Rameshwar Sharma</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The ancestor of tomato underwent whole genome triplication ca. 71 Myr ago followed by widespread gene loss. However, few of the triplicated genes are retained in modern day tomato including lycopene beta cyclase that mediates conversion of lycopene to <italic>β</italic>-carotene. The fruit specific <italic>β</italic>-carotene formation is mediated by a chromoplast-specific paralog of lycopene beta cyclase (<italic>CYC-B)</italic> gene. Presently limited information is available about how the variations in <italic>CYC-B</italic> gene contributed to its neofunctionalization. <italic>CYC-B</italic> gene in tomato clade contained several SNPs and In-Dels in the coding sequence (33 haplotypes) and promoter region (44 haplotypes). The <italic>CYC-B</italic> gene coding sequence in tomato appeared to undergo purifying selection. The transit peptide sequence of CYC-B protein was predicted to have a stronger plastid targeting signal than its chloroplast specific paralog indicating a possible neofunctionalization. In promoter of two <italic>B</italic><sup><italic>og</italic></sup> (<italic>Beta old gold</italic>) mutants, a NUPT (nuclear plastid) DNA fragment of 256 bp, likely derived from a <italic>S</italic>. <italic>chilense</italic> accession, was present. In transient expression assay, this promoter was more efficient than the “<italic>Beta</italic> type” promoter. CARGATCONSENSUS box sequences are required for the binding of the MADS-box regulatory protein RIPENING INHIBITOR (RIN). The loss of CARGATCONSENSUS box sequence from <italic>CYC-B</italic> promoter in tomato may be related to attenuation of its efficiency to promote higher accumulation of <italic>β</italic>-carotene than lycopene during fruit ripening.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Egea, I" uniqKey="Egea I">I Egea</name></author><author><name sortKey="Bian, W" uniqKey="Bian W">W Bian</name></author><author><name sortKey="Barsan, C" uniqKey="Barsan C">C Barsan</name></author><author><name sortKey="Jauneau, A" uniqKey="Jauneau A">A Jauneau</name></author><author><name sortKey="Pech, J C" uniqKey="Pech J">J-C Pech</name></author><author><name sortKey="Latche, A" uniqKey="Latche A">A Latché</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Garcia Closas, R" uniqKey="Garcia Closas R">R García-Closas</name></author><author><name sortKey="Berenguer, A" uniqKey="Berenguer A">A 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sortKey="Zhong, S" uniqKey="Zhong S">S Zhong</name></author><author><name sortKey="Fei, Z" uniqKey="Fei Z">Z Fei</name></author><author><name sortKey="Chen, Y R" uniqKey="Chen Y">Y-R Chen</name></author><author><name sortKey="Zheng, Y" uniqKey="Zheng Y">Y Zheng</name></author><author><name sortKey="Huang, M" uniqKey="Huang M">M Huang</name></author><author><name sortKey="Vrebalov, J" uniqKey="Vrebalov J">J Vrebalov</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Mohan, Vijee" sort="Mohan, Vijee" uniqKey="Mohan V" first="Vijee" last="Mohan">Vijee Mohan</name><name sortKey="Pandey, Arun" sort="Pandey, Arun" uniqKey="Pandey A" first="Arun" last="Pandey">Arun Pandey</name><name sortKey="Sharma, Rameshwar" sort="Sharma, Rameshwar" uniqKey="Sharma R" first="Rameshwar" last="Sharma">Rameshwar Sharma</name><name sortKey="Sreelakshmi, Yellamaraju" sort="Sreelakshmi, Yellamaraju" uniqKey="Sreelakshmi Y" first="Yellamaraju" last="Sreelakshmi">Yellamaraju Sreelakshmi</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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